12971 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
12971	chr_6	WD40 superfamily	492876	495386	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451169	Thaps12971.2, Thaps12971.1, Thaps12971.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0141	0.18	1.7 250

Most Highly Correlated Transcripts

bd1945 (bd1945) NA 0.9547	17657 HSR1_MMR1 0.9278	bd1876 (bd1876) NatB_MDM20 superfamily 0.9272	13578 SrmB 0.9222	bd190 (bd190) SrmB 0.922	37786 SrmB 0.922
31710 RIO1_euk 0.9145	262722 DEXDc superfamily 0.9144	21375 hypothetical protein 0.9134	bd96 (bd96) eIF-3_zeta 0.9107

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	65.434	8.01E-12	194 - 329	superfamily	238121

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_51897	PHATRDRAFT_51897	147520	240702	210455	Cre03.g159950.t1.1	AT3G56990.1	555658

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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