17623 SUMT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17623 chr_4 SUMT 126744 128207 - SUMT

Synonyms

NCBI ID Ensembl Genomes exon ID
7446729 Thaps17623.1, Thaps17623.3, Thaps17623.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0217
 0.33

Most Highly Correlated Transcripts

5394

hypothetical protein
0.8612

bd1806

(bd1806) AAT_I superfamily
0.8515

bd524

(bd524) NA
0.8413

269297

S_TKc
0.8173

5080

hypothetical protein
0.8084

22720

hypothetical protein
0.8038

4067

hypothetical protein
0.8009

bd1807

(bd1807) RRS1 superfamily
0.797

39516

PLN02951
0.7927

bd381

(bd381) NA
0.7885

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SUMT Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III... cl00304 299.317 3.03E-100 120 - 350 specific 212501
TP_methylase superfamily S-AdoMet dependent tetrapyrrole methylases; This family uses S-AdoMet (S-adenosyl-L-methionine or... - 299.317 3.03E-100 120 - 350 superfamily 260339

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12925 PHATRDRAFT_12925 198425 182807 213726 Cre09.g396401.t1.1 AT5G40850.1 537510

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008152 GO:0008168 GO:0006779 GO:0004851 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0008168

methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group to an acceptor molecule.
GO Category: 
MF

GO:0006779

porphyrin-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO Category: 
BP

GO:0004851

uroporphyrin-III C-methyltransferase activity

Details: 
Catalysis of the reaction: 2 S-adenosyl-L-methionine + uroporphyrin III = 2 S-adenosyl-L-homocysteine + precorrin-2.
GO Category: 
MF

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