18078 Gph
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18078 chr_2 Gph 806370 807478 - Gph

Synonyms

NCBI ID Ensembl Genomes exon ID
7446522 Thaps18078.3, Thaps18078.1, Thaps18078.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0016

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0092
 0.42

Most Highly Correlated Transcripts

37288

PLN02487
0.8871

268592

VDE superfamily
0.8729

262510

Alg6_Alg8 superfamily
0.8719

574

PRK05444
0.8563

bd908

(bd908) NA
0.8502

4465

hypothetical protein
0.8468

3853

DUF3493
0.8448

36858

2A0114
0.8401

31829

CBS_like
0.8388

3461

PRK00927
0.8388

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HAD_like superfamily Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-... - 63.9283 7.59E-13 70 - 231 superfamily 119389
HAD_like superfamily Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-... - 63.9283 7.59E-13 70 - 231 superfamily 119389
Gph Predicted phosphatases [General function prediction only] - 87.5088 1.10E-20 68 - 280 multi-dom 223620

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5811 PHATRDRAFT_5811 Not available Not available 446940 Cre03.g193000.t1.1 AT2G33255.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0008967 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0008967

phosphoglycolate phosphatase activity

Details: 
Catalysis of the reaction: 2-phosphoglycolate + H(2)O = glycolate + phosphate.
GO Category: 
MF

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