18407 Ntn_hydrolase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18407 chr_9 Ntn_hydrolase superfamily 419523 420587 + Ntn_hydrolase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449317 Thaps18407.2, Thaps18407.3, Thaps18407.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0445

Most Highly Correlated Transcripts

270222

0.9545

bd824

(bd824) NA
0.9047

bd738

(bd738) NA
0.8709

bd1801

(bd1801) NA
0.869

plastid_psb28

0.8674

bd1802

(bd1802) NA
0.8658

7696

2_5_RNA_ligase2
0.8606

bd739

(bd739) NA
0.8564

7335

hypothetical protein
0.8475

25509

hypothetical protein
0.8474

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 181.672 9.48E-57 37 - 220 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 89.6644 1.40E-21 33 - 220 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12731 PHATRDRAFT_12731 231614 68921 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0005839 GO:0006511 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004299

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments