18841 RRM_RBM8
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
18841 chr_4 RRM_RBM8 533874 534531 - RRM_RBM8
NCBI ID Ensembl Genomes exon ID
7452600 Thaps18841.3, Thaps18841.1, Thaps18841.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0142
Normalized Mean Residue
Thaps_bicluster_0180
0.31
GRX_PICOT_like
0.9467
hypothetical protein
0.9431
(bd1941) NA
0.9416
(bd410) HNHc
0.9391
DUF2997
0.9206
hypothetical protein
0.9143
NAT_SF
0.9141
hypothetical protein
0.9114
Chloroa_b-bind
0.9114
Methyltransf_31
0.9114
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_RBM8 RNA recognition motif in RNA-binding protein RBM8A, RBM8B nd similar proteins; This subfamily... cl17169 175.484 3.62E-57 46 - 132 specific 240770
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 175.484 3.62E-57 46 - 132 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 80.3762 4.33E-19 41 - 144 multi-dom 223796
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20716 PHATRDRAFT_20716 270812 301474 413981 Cre12.g526750.t1.2 AT1G51510.1 317912
KEGG description KEGG Pathway
Spliceosome map03040
GO:0001584 GO:0007186 GO:0016021 GO:0003676 GO:0003723 GO:0005634 GO:0005737 GO:0006396 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

NA

Details: 
NA
GO Category: 
NA

G-protein coupled receptor signaling pathway

Details: 
A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.
GO Category: 
BP

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

peptidyl-prolyl cis-trans isomerase activity

Details: 
Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA

NA

Details: 
NA
GO Category: 
NA

NA

Details: 
NA
GO Category: 
NA
Log in to post comments