18991 RRM_RBM42
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18991 chr_22 RRM_RBM42 470858 471763 - RRM_RBM42

Synonyms

NCBI ID Ensembl Genomes exon ID
7443878 Thaps18991.2, Thaps18991.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Most Highly Correlated Transcripts

11848

hypothetical protein
0.8303

35136

NA
0.8283

270087

WD40
0.821

38802

PHF5
0.8208

29000

PI3Kc_like superfamily
0.8056

36007

Aldolase_II superfamily
0.8038

25182

hypothetical protein
0.8014

27318

hypothetical protein
0.7998

4680

hypothetical protein
0.7986

40627

MPP_PP2A_PP4_PP6
0.7983

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_RBM42 RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins; This subfamily... cl17169 135.428 4.71E-40 153 - 242 specific 240829
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 135.428 4.71E-40 153 - 242 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 74.5982 6.22E-16 155 - 267 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13402 PHATR_13402 202878 156619 433415 Cre02.g088800.t1.2 AT3G04500.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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