19937 Med31 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19937	chr_17	Med31 superfamily	277868	278200	+	Med31 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453149	Thaps19937.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0455

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0024	0.39

Most Highly Correlated Transcripts

8509 hypothetical protein 0.8634	10279 hypothetical protein 0.851	10397 hypothetical protein 0.8373	plastid_psb28 0.8345	261357 NAD_binding_8 superfamily 0.833	6062 hypothetical protein 0.8322
23086 hypothetical protein 0.8276	23029 hypothetical protein 0.8261	10515 hypothetical protein 0.8261	12104 IF-2B superfamily 0.8251

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Med31 superfamily		SOH1; The family consists of Saccharomyces cerevisiae SOH1 homologues. SOH1 is responsible for the...	-	97.3241	3.90E-27	9 - 66	superfamily	261186

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_38312	PHATRDRAFT_38312	271155	Not available	Not available	Cre12.g520850.t1.2	AT5G19910.1	385795

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000119 GO:0016455 GO:0045449 -

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