20795 SCP_euk
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20795 chr_1 SCP_euk 1321169 1323226 - SCP_euk

Synonyms

NCBI ID Ensembl Genomes exon ID
7445303 Thaps20795.2, Thaps20795.3, Thaps20795.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0112

Most Highly Correlated Transcripts

269655

PRK09330
0.9033

13448

Sec1
0.8926

2145

hypothetical protein
0.8829

22963

WD40 superfamily
0.879

3354

hypothetical protein
0.8715

10810

HP superfamily
0.8715

6693

hypothetical protein
0.8674

3541

hypothetical protein
0.8628

9880

SGNH_hydrolase superfamily
0.8621

261400

NA
0.8617

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes... cl00133 81.0272 6.91E-18 409 - 538 specific 240180
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 81.0272 6.91E-18 409 - 538 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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