20800 XRN_N superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20800 chr_1 XRN_N superfamily 1343621 1346757 + XRN_N superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0317

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0147
 0.38

Most Highly Correlated Transcripts

12259

COG1204
0.8963

262303

(Helicase_2) UvrD-helicase
0.8837

9591

efThoc1 superfamily
0.8775

15605

PKc_like superfamily
0.8769

1693

hypothetical protein
0.8766

4071

hypothetical protein
0.8758

33033

YSH1
0.871

586

PTZ00018
0.8698

23568

hypothetical protein
0.8655

22757

(Tp_Hox6a) zf-CW
0.864

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
XRN_N superfamily XRN 5'-3' exonuclease N-terminus; This family aligns residues towards the N-... - 83.5403 8.32E-18 197 - 391 superfamily 251765

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 245686 298966 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008856 GO:0008858 GO:0008997 GO:0016895 -

GO:0008856

exodeoxyribonuclease X activity

Details: 
Catalysis of the endonucleolytic cleavage of supercoiled plasma DNA to linear DNA duplexes.
GO Category: 
MF

GO:0008858

NA

Details: 
NA
GO Category: 
NA

GO:0008997

ribonuclease R activity

Details: 
Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction, leaving an undigested core of 3-5 nucleotides.
GO Category: 
MF

GO:0016895

exodeoxyribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

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