20821 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20821 chr_1 SCP superfamily 1456724 1458563 - SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451477 Thaps20821.1, Thaps20821.3, Thaps20821.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0096

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0030
 0.47

Most Highly Correlated Transcripts

1316

hypothetical protein
0.9229

5161

hypothetical protein
0.8912

21606

plant_peroxidase_like superfamily
0.8895

3108

hypothetical protein
0.8874

10935

Ion_trans
0.8729

22304

hypothetical protein
0.8726

3632

hypothetical protein
0.8692

4385

hypothetical protein
0.8689

8274

hypothetical protein
0.8589

22062

hypothetical protein
0.8478

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 83.0282 4.79E-19 306 - 440 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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