20845 Tic22 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20845	chr_1	Tic22 superfamily	1616617	1617990	+	Tic22 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445140	Thaps20845.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0447

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0027	0.38

Most Highly Correlated Transcripts

3265 zf-C3HC superfamily 0.8631	13448 Sec1 0.8614	24758 hypothetical protein 0.8603	261400 NA 0.8547	4022 hypothetical protein 0.8484	7707 hypothetical protein 0.8419
3854 hypothetical protein 0.8414	3071 NA 0.8385	25068 hypothetical protein 0.8343	30701 PRK05279 0.834

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tic22 superfamily		Tic22-like family; The preprotein translocation at the inner envelope membrane of chloroplasts so...	-	76.3312	5.62E-16	211 - 433	superfamily	262170

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_34168	PHATRDRAFT_34168	247695	195797	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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