20859 SIR2 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20859 chr_1 SIR2 superfamily 1707081 1708826 + SIR2 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445155 Thaps20859.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0069
 0.35

Most Highly Correlated Transcripts

20930

DRE_TIM_metallolyase superfamily
0.9112

4372

hypothetical protein
0.907

21925

NADB_Rossmann superfamily
0.8942

24709

(NTT6) TLC superfamily
0.8935

25365

hypothetical protein
0.8934

269034

hypothetical protein
0.8922

24217

hypothetical protein
0.8856

21959

hypothetical protein
0.8843

22139

Cyt_C5_DNA_methylase superfamily
0.8837

22448

hypothetical protein
0.8833

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SIR2 superfamily SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze... - 98.41 1.36E-23 157 - 276 superfamily 260250

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_39523 PHATRDRAFT_39523 273524 285288 214285 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005677 GO:0006342 GO:0006355 GO:0008939 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005677

chromatin silencing complex

Details: 
Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing.
GO Category: 
CC

GO:0006342

chromatin silencing

Details: 
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
GO Category: 
BP

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008939

nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity

Details: 
Catalysis of the reaction: 5,6-dimethylbenzimidazole + nicotinate D-ribonucleotide = alpha-ribazole 5'-phosphate + H(+) + nicotinate.
GO Category: 
MF

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