20874 COG0390
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20874 chr_1 COG0390 1780532 1782363 - COG0390

Synonyms

NCBI ID Ensembl Genomes exon ID
7446781 Thaps20874.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0237

Most Highly Correlated Transcripts

24167

hypothetical protein
0.9265

261863

GlcNAc superfamily
0.9123

16114

PLN02350
0.9103

264678

CysJ
0.9084

4249

hypothetical protein
0.908

263397

(PGAM4) HP_PGM_like
0.9067

1602

DUF974 superfamily
0.9052

5270

Methyltransf_16 superfamily
0.901

21909

(Tp_bZIP17) regulator [Rayko]
0.9009

40200

TRX_reduct
0.8997

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] cl00424 154.017 1.10E-42 30 - 258 specific 223467
UPF0014 superfamily Uncharacterized protein family (UPF0014); Uncharacterised protein family (UPF0014). - 154.017 1.10E-42 30 - 258 superfamily 241854
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 114.894 4.27E-29 377 - 561 superfamily 266551
SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] - 110.677 1.51E-27 372 - 587 multi-dom 224059

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 463439 Cre16.g673000.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

Add comment

Log in to post comments