20889 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20889 chr_1 Aa_trans superfamily 1838852 1841338 + Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443124 Thaps20889.3, Thaps20889.1, Thaps20889.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0487

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0002
 0.43

Most Highly Correlated Transcripts

bd692

(bd692) NA
0.8292

bd1790

(bd1790) NA
0.7914

bd1786

(bd1786) GLTP superfamily
0.7512

bd1813

(bd1813) NA
0.7479

bd1941

(bd1941) NA
0.7461

bd1839

(bd1839) NA
0.7431

12899

AAA
0.7294

5656

DUF1823 superfamily
0.7248

13448

Sec1
0.7235

16114

PLN02350
0.7219

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 119.71 6.70E-30 86 - 491 superfamily 266708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47781 PHATRDRAFT_47781 186398 199976 213954 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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