12899 AAAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
12899	chr_3	AAA	1287032	1289548	-	AAA

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps12899.3, Thaps12899.1, Thaps12899.2, Thaps12899.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0289

Most Highly Correlated Transcripts

3575 hypothetical protein 1	10811 EEP superfamily 0.9485	7356 Nudix_Hydrolase superfamily 0.9399	20651 MATE_like superfamily 0.9367	32782 MPN superfamily 0.9352	42508 WD40 0.932
262521 WD40 superfamily 0.9315	9912 hypothetical protein 0.9304	23500 crypto_DASH 0.9286	23753 hypothetical protein 0.9285

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	cl18944	88.3571	3.72E-20	269 - 412	specific	99707
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	88.3571	3.72E-20	269 - 412	superfamily	267297
AAA		ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety...	-	65.8577	1.47E-12	269 - 414	multi-dom	214640

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12620	PHATRDRAFT_12620	137701	324030	452918	Cre10.g461250.t1.1	AT4G04910.1	488608

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000166 GO:0017111 GO:0005524 GO:0008576 -

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