21122 Nipped-B_CThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21122	chr_2	Nipped-B_C	207097	213798	+	Nipped-B_C

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452178	Thaps21122.4, Thaps21122.3, Thaps21122.2, Thaps21122.5, Thaps21122.6, Thaps21122.1, Thaps21122.7

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0414

Most Highly Correlated Transcripts

23754 hypothetical protein 0.9415	21852 hypothetical protein 0.9351	24688 hypothetical protein 0.9308	22333 hypothetical protein 0.9306	24852 hypothetical protein 0.9294	7121 DUF3684 superfamily 0.9263
23279 Tho2 0.9241	5829 hypothetical protein 0.923	23582 hypothetical protein 0.9194	9790 hypothetical protein 0.9193

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nipped-B_C superfamily		Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or sister...	-	148.551	8.40E-40	1582 - 1793	superfamily	257332
Nipped-B_C superfamily		Sister chromatid cohesion C-terminus; This domain lies towards the C-terminus of nipped-B or sister...	-	148.551	8.40E-40	1582 - 1793	superfamily	257332
PHD		PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner...	cl17445	65.2088	1.87E-12	853 - 896	specific	250011
PHD superfamily		PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner...	-	65.2088	1.87E-12	853 - 896	superfamily	266687

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
8069	PHATRDRAFT_50138	PHATRDRAFT_50138	166602	65494	Not available	Cre06.g278269.t1.1	AT5G15540.1	349205

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003677 GO:0006355 -

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