21224 RRM_SFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21224	chr_2	RRM_SF	717364	718451	+	RRM_SF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450204	Thaps21224.2, Thaps21224.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0423

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0029	0.39

Most Highly Correlated Transcripts

18662 ADK 0.834	39241 Ras_like_GTPase superfamily 0.8094	2634 hypothetical protein 0.809	268867 Peptidase_S28 superfamily 0.8087	4481 COG1011 0.8068	22979 hypothetical protein 0.8039
12021 hypothetical protein 0.7999	2773 hypothetical protein 0.7957	10379 hypothetical protein 0.7884	2159 hypothetical protein 0.7878

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	cl17169	63.4781	1.20E-13	81 - 154	specific	240668
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	63.4781	1.20E-13	81 - 154	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35561	PHATRDRAFT_35561	175598	156444	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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