21799 GCV_T superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21799 chr_3 GCV_T superfamily 1194854 1197376 - GCV_T superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451695 Thaps21799.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0169

Most Highly Correlated Transcripts

15977

(DGK) DAGK_acc
0.9124

26212

(COP2) COG5096
0.9068

5760

SART-1
0.9008

269663

(COP4) SEC21
0.8996

25084

Bestrophin superfamily
0.8987

24334

EXS superfamily
0.8974

24627

hypothetical protein
0.8957

36372

S_TKc
0.8956

268346

hypothetical protein
0.8941

23467

hypothetical protein
0.8913

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GCV_T superfamily Aminomethyltransferase folate-binding domain; This is a family of glycine cleavage T-proteins, part... - 67.6909 6.16E-13 127 - 374 superfamily 261109

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49341 PHATRDRAFT_49341 Not available 237008 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008236 GO:0004047 GO:0005737 GO:0006546 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004047

aminomethyltransferase activity

Details: 
Catalysis of the reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006546

glycine catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
GO Category: 
BP

Add comment

Log in to post comments