21900 COG1233
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21900 chr_3 COG1233 1688885 1690758 + COG1233

Synonyms

NCBI ID Ensembl Genomes exon ID
7451334 Thaps21900.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0071

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0030
 0.47

Most Highly Correlated Transcripts

bd1645

(bd1645) tpt
0.8761

bd298

(bd298) ABM superfamily
0.8606

7304

hypothetical protein
0.8548

bd463

(bd463) Aa_trans superfamily
0.8153

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8129

bd1809

(bd1809) ZnMc_pappalysin_like
0.8119

16295

FBPase
0.8063

bd1765

(bd1765) NA
0.8052

23725

Rubis-subs-bind superfamily
0.8048

bd760

(bd760) ZnMc superfamily
0.8029

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 160.358 8.21E-43 45 - 585 superfamily 267487
COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and... - 172.619 4.01E-47 45 - 586 multi-dom 224154

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45243 PHATRDRAFT_45243 225509 296898 456198 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016117 GO:0016705 GO:0050660 -

GO:0016117

carotenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
GO Category: 
BP

GO:0016705

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

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