2218 (Tp_HSF_2.4a) HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2218 chr_2 (Tp_HSF_2.4a) HSF_DNA-bind superfamily 470240 471466 - HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448660 Thaps2218.2, Thaps2218.1, Thaps2218.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0302

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0058
 0.44

Most Highly Correlated Transcripts

bd735

(bd735) NA
0.876

bd738

(bd738) NA
0.8067

bd1801

(bd1801) NA
0.8031

4108

hypothetical protein
0.8017

bd737

(bd737) NA
0.7754

bd690

(bd690) NA
0.77

22355

hypothetical protein
0.7667

bd1959

(bd1959) NA
0.7611

bd1806

(bd1806) AAT_I superfamily
0.7511

bd643

(bd643) NA
0.7441

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 57.895 8.08E-11 123 - 217 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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