22258 PUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22258 chr_4 PUB 1057711 1060026 - PUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7447950 Thaps22258.1, Thaps22258.3, Thaps22258.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0449

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0248
 0.34

Most Highly Correlated Transcripts

4338

hypothetical protein
0.9439

22916

DUF1162 superfamily
0.9383

11869

hypothetical protein
0.9382

12500

SNF2_N
0.9357

12645

MYSc
0.9281

37638

HrpA
0.9252

23952

hypothetical protein
0.9237

5321

CobN-Mg_chel superfamily
0.9234

36563

MYSc
0.9222

11371

hypothetical protein
0.9196

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PUB PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... cl15262 85.8968 5.47E-20 479 - 574 specific 198416
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 85.8968 5.47E-20 479 - 574 superfamily 265658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42593 PHATRDRAFT_42593 Not available 327317 Not available Not available Not available 510400

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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