22414 (Tp_HSF_3.2j) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22414 chr_4 (Tp_HSF_3.2j) HSF_DNA-bind 1868865 1870669 - HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7443766 Thaps22414.2, Thaps22414.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0038

Most Highly Correlated Transcripts

6935

(Tp_HSF_1.3h) HSF_DNA-bind superfamily
0.813

264583

(PYK4) PykF
0.7931

3770

DUF3506 superfamily
0.7894

bd780

(bd780) NA
0.7761

25319

hypothetical protein
0.7732

bd1890

(bd1890) NA
0.7704

bd296

(bd296) EFh
0.7701

4411

hypothetical protein
0.7573

11478

hypothetical protein
0.7566

262408

6PGL
0.7499

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 101.423 7.08E-26 143 - 234 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 101.423 7.08E-26 143 - 234 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44099 PHATRDRAFT_44099 154177 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

Add comment

Log in to post comments