22464 (FUM1) PLN00133
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22464 chr_4 (FUM1) PLN00133 2088816 2090837 + PLN00133

Synonyms

NCBI ID Ensembl Genomes exon ID
7451374 Thaps22464.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0196

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0137
 0.33

Most Highly Correlated Transcripts

7607

Methyltransf_31
0.8996

7193

hypothetical protein
0.8953

6028

NA
0.8919

23740

DUF72
0.8911

1467

hypothetical protein
0.8882

11590

hypothetical protein
0.8864

6236

COG4976
0.8827

36372

S_TKc
0.8827

4302

DUF788 superfamily
0.8808

2317

Mito_carr
0.8807

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Fumerase Fumarate hydratase (Fumerase); This family consists of several bacterial fumarate hydratase... cl00851 350.207 1.30E-115 173 - 456 specific 253319
Fumerase superfamily Fumarate hydratase (Fumerase); This family consists of several bacterial fumarate hydratase... - 350.207 1.30E-115 173 - 456 superfamily 260660
Fumerase_C Fumarase C-terminus; This family consists of the C terminal region of several bacterial fumarate... cl00795 305.212 3.64E-99 460 - 671 specific 253320
Fumerase_C superfamily Fumarase C-terminus; This family consists of the C terminal region of several bacterial fumarate... - 305.212 3.64E-99 460 - 671 superfamily 260626
PLN00133 class I-fumerate hydratase; Provisional - 1146.15 0 100 - 673 multi-dom 215068

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19708 PHATRDRAFT_19708 210498 300333 438455 Cre06.g254400.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0016829 GO:0004333 GO:0006091 -

GO:0016829

lyase activity

Details: 
Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
GO Category: 
MF

GO:0004333

fumarate hydratase activity

Details: 
Catalysis of the reaction: (S)-malate = fumarate + H(2)O.
GO Category: 
MF

GO:0006091

generation of precursor metabolites and energy

Details: 
The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
GO Category: 
BP

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