22544 Delta6-FADS-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22544 chr_5 Delta6-FADS-like 196281 198011 + Delta6-FADS-like

Synonyms

NCBI ID Ensembl Genomes exon ID
7448460 Thaps22544.2, Thaps22544.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0154

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0064
 0.41

Most Highly Correlated Transcripts

264556

FBPase
0.8216

24155

APH_ChoK_like superfamily
0.8168

7607

Methyltransf_31
0.8019

260829

GalK
0.7931

24767

hypothetical protein
0.7919

27451

TIP49
0.7904

bd654

(bd654) Sec1 superfamily
0.789

33353

TRX_family
0.7888

4034

hypothetical protein
0.7834

9772

TOPEUc
0.7833

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes:... cl00615 145.477 1.58E-40 232 - 482 specific 239583
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 145.477 1.58E-40 232 - 482 superfamily 260534

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22510 PHATRDRAFT_22510 138481 Not available 435152 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016491 GO:0006636 GO:0016020 GO:0016717 GO:0016213 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

GO:0016213

linoleoyl-CoA desaturase activity

Details: 
Catalysis of the reaction: linoleoyl-CoA + reduced acceptor + O2 = gamma-linolenoyl-CoA + acceptor + 2 H2O.
GO Category: 
MF

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