2262 SNc superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2262	chr_2	SNc superfamily	575909	576689	-	SNc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446483	Thaps2262.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0205

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0130	0.40	0.00008 4.1

Most Highly Correlated Transcripts

6472 hypothetical protein 0.9035	2944 hypothetical protein 0.8897	3730 hypothetical protein 0.888	23516 hypothetical protein 0.8871	4980 TRAM_LAG1_CLN8 0.88	31829 CBS_like 0.8789
36964 PLN02716 0.8782	1044 hypothetical protein 0.8748	261400 NA 0.8743	4292 hypothetical protein 0.8728

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SNc superfamily		Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes...	-	98.5005	1.43E-25	77 - 200	superfamily	238102
SNc		Staphylococcal nuclease homologues; Staphylococcal nuclease homologues.	-	95.7912	1.70E-24	77 - 200	multi-dom	214615

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	167357	309722	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0004518 -

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