22897 UBP12
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22897 chr_5 UBP12 1970399 1974357 - UBP12

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0129

Most Highly Correlated Transcripts

262573

G_glu_transpept
0.923

8384

hypothetical protein
0.9049

11962

hypothetical protein
0.9028

4556

hypothetical protein
0.8977

1268

hypothetical protein
0.8956

3719

DECH_helic
0.8885

4077

hypothetical protein
0.8833

4672

hypothetical protein
0.8817

262439

Bromodomain superfamily
0.8792

5660

hypothetical protein
0.8781

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 71.5379 1.25E-13 602 - 785 superfamily 261337
UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] - 197.798 1.16E-52 596 - 1066 multi-dom 227847

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47704 PHATRDRAFT_47704 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0004221 GO:0006511 GO:0006512 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

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