22950 DUF1501 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22950	chr_6	DUF1501 superfamily	84334	98087	+	DUF1501 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448357	Thaps22950.14, Thaps22950.9, Thaps22950.12, Thaps22950.5, Thaps22950.1, Thaps22950.15, Thaps22950.10, Thaps22950.11, Thaps22950.17, Thaps22950.16, Thaps22950.2, Thaps22950.7, Thaps22950.18, Thaps22950.4, Thaps22950.8, Thaps22950.3, Thaps22950.6, Thaps22950.13

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0496

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0033	0.48	0.000000021 0.013

Most Highly Correlated Transcripts

21438 hypothetical protein 0.7777	24325 hypothetical protein 0.7706	23334 hypothetical protein 0.7622	5857 hypothetical protein 0.7546	7256 hypothetical protein 0.742	25671 hypothetical protein 0.7405
23519 SIN3 0.7326	35136 NA 0.7305	27836 Chitin_synth_C 0.7295	25512 hypothetical protein 0.7282

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF1501 superfamily		Protein of unknown function (DUF1501); This family contains a number of hypothetical bacterial...	-	135.357	6.09E-33	3588 - 3987	superfamily	268208
DUF1800 superfamily		Protein of unknown function (DUF1800); This is a family of large bacterial proteins of unknown...	-	115.435	1.72E-26	2681 - 2843	superfamily	268242
DUF1800 superfamily		Protein of unknown function (DUF1800); This is a family of large bacterial proteins of unknown...	-	115.435	1.72E-26	2681 - 2843	superfamily	268242

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46559	PHATRDRAFT_46559	Not available	Not available	462184	Cre07.g340450.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005489 GO:0005506 GO:0006118 -

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