Thaps_bicluster_0033 Residual: 0.48
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0033 0.48 Thalassiosira pseudonana
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Displaying 1 - 47 of 47
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1077 hypothetical protein

1077 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1077
10848 hypothetical protein

10848 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10848
11516 hypothetical protein

11516 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11516
11592 hypothetical protein

11592 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

11592
11801 Methyltrans_RNA superfamily

11801 - Methyltrans_RNA superfamily

GO Terms:

GO:0005554

CD Domains:

Go To Gene Page:

11801
12164 hypothetical protein

12164 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12164
16656 MPP_Nbla03831

16656 - MPP_Nbla03831

GO Terms:

GO:0016787

CD Domains:

Go To Gene Page:

16656
1751 hypothetical protein

1751 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1751
1797 hypothetical protein

1797 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1797
18190 P4Hc

18190 - P4Hc

GO Terms:

GO:0016706, GO:0019538, GO:0004656, GO:0016222

CD Domains:

Go To Gene Page:

18190
19479 PhyH superfamily

19479 - PhyH superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

19479
19890 CbpA

19890 - CbpA

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

19890
20688 (Tp_CBF/NF5) regulator [Rayko]

20688 - (Tp_CBF/NF5) regulator [Rayko]

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

20688
20834 DLP_2

20834 - DLP_2

GO Terms:

NA

CD Domains:

Go To Gene Page:

20834
22643 hypothetical protein

22643 - hypothetical protein

GO Terms:

GO:0003676, GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

22643
22950 DUF1501 superfamily

22950 - DUF1501 superfamily

GO Terms:

GO:0005489, GO:0005506, GO:0006118

CD Domains:

Go To Gene Page:

22950
24888 hypothetical protein

24888 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24888
261219 Mad3_BUB1_I superfamily

261219 - Mad3_BUB1_I superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

261219
261384 niemann-pick C type protein-like protein

261384 - niemann-pick C type protein-like protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

261384
262335 hypothetical protein

262335 - hypothetical protein

GO Terms:

GO:0008168

CD Domains:

Go To Gene Page:

262335
262514 (HAL3) Flavoprotein superfamily

262514 - (HAL3) Flavoprotein superfamily

GO Terms:

GO:0004633

CD Domains:

Go To Gene Page:

262514
262580 AdoMet_dc

262580 - AdoMet_dc

GO Terms:

GO:0008757, GO:0003824

CD Domains:

Go To Gene Page:

262580
262854 CBS_pair superfamily

262854 - CBS_pair superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

262854
263700 HA

263700 - HA

GO Terms:

NA

CD Domains:

Go To Gene Page:

263700
264902 (cht1) chitinase

264902 - (cht1) chitinase

GO Terms:

NA

CD Domains:

Go To Gene Page:

264902
270228 (Lhcx4) fucoxanthin chlorophyll a/c protein, LI818 clade

270228 - (Lhcx4) fucoxanthin chlorophyll a/c protein, LI818 clade

GO Terms:

NA

CD Domains:

Go To Gene Page:

270228
27435 PAH

27435 - PAH

GO Terms:

GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

27435
2808 PKc_like superfamily

2808 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

2808
31142 H15

31142 - H15

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

31142
31174 hypothetical protein

31174 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

31174
31803 MYSc

31803 - MYSc

GO Terms:

GO:0003774, GO:0005524, GO:0016459

CD Domains:

Go To Gene Page:

31803
33055 PLN02256

33055 - PLN02256

GO Terms:

NA

CD Domains:

Go To Gene Page:

33055
34233 AdoMet_dc

34233 - AdoMet_dc

GO Terms:

NA

CD Domains:

Go To Gene Page:

34233
35059 MYSc

35059 - MYSc

GO Terms:

GO:0003774, GO:0005524, GO:0016459

CD Domains:

Go To Gene Page:

35059
35186 PRK13357

35186 - PRK13357

GO Terms:

GO:0003824, GO:0008152, GO:0004084, GO:0009081

CD Domains:

Go To Gene Page:

35186
35499 Smc

35499 - Smc

GO Terms:

GO:0005524, GO:0005694, GO:0051276, GO:0016887, GO:0005515

CD Domains:

Go To Gene Page:

35499
3607 hypothetical protein

3607 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3607
3660 COG5038

3660 - COG5038

GO Terms:

NA

CD Domains:

Go To Gene Page:

3660
3788 Methyltransf_22 superfamily

3788 - Methyltransf_22 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

3788
38514 DUF3593

38514 - DUF3593

GO Terms:

NA

CD Domains:

Go To Gene Page:

38514
4590 hypothetical protein

4590 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

4590
4915 hypothetical protein

4915 - hypothetical protein

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

4915
5317 hypothetical protein

5317 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5317
5551 hypothetical protein

5551 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5551
5722 hypothetical protein

5722 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5722
6404 hypothetical protein

6404 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6404
9691 LRR_RI superfamily

9691 - LRR_RI superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

9691
GO ID Go Term p-value q-value Cluster
GO:0009081 branched chain family amino acid metabolism 0.00578093 1 Thaps_bicluster_0033
GO:0051276 chromosome organization and biogenesis 0.0143942 1 Thaps_bicluster_0033
GO:0016567 protein ubiquitination 0.0211078 1 Thaps_bicluster_0033
GO:0006355 regulation of transcription, DNA-dependent 0.0546807 1 Thaps_bicluster_0033
GO:0019538 protein metabolism 0.125374 1 Thaps_bicluster_0033
GO:0006457 protein folding 0.317461 1 Thaps_bicluster_0033
GO:0008152 metabolism 0.332159 1 Thaps_bicluster_0033
GO:0006468 protein amino acid phosphorylation 0.468128 1 Thaps_bicluster_0033
GO:0006118 electron transport 0.547503 1 Thaps_bicluster_0033
GO:0006508 proteolysis and peptidolysis 0.577098 1 Thaps_bicluster_0033
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