23052 CAP_GLYThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23052	chr_6	CAP_GLY	616196	618153	-	CAP_GLY

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443567	Thaps23052.2, Thaps23052.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0404

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0047	0.45

Most Highly Correlated Transcripts

22823 Maf1 superfamily 0.9132	1275 hypothetical protein 0.9051	3842 hypothetical protein 0.8978	3260 hypothetical protein 0.8956	4573 hypothetical protein 0.8952	20720 acyl_WS_DGAT 0.8934
4565 hypothetical protein 0.8928	2580 AarF 0.8885	4482 hypothetical protein 0.8885	3493 hypothetical protein 0.8864

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP_GLY		Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and...	cl08315	70.692	5.81E-15	12 - 84	specific	214997
CAP_GLY superfamily		CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of...	-	70.692	5.81E-15	12 - 84	superfamily	263584

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	186798	318664	Not available	Cre02.g095113.t1.1	AT1G71440.1	560893

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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