23212 SETThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23212	chr_6	SET	1412640	1413777	-	SET

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442731	Thaps23212.2, Thaps23212.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0114

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0291	0.48	30000 2800

Most Highly Correlated Transcripts

1938 hypothetical protein 0.8819	23092 hypothetical protein 0.8702	22686 hypothetical protein 0.8618	22742 hypothetical protein 0.8588	2812 hypothetical protein 0.8557	17585 APH_ChoK_like superfamily 0.8555
22474 hypothetical protein 0.8549	bd923 (bd923) NA 0.8542	268435 hypothetical protein 0.853	261400 NA 0.8521

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SET		SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on...	cl02566	73.1375	3.18E-16	182 - 308	specific	214614
SET superfamily		SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be...	-	73.1375	3.18E-16	182 - 308	superfamily	261347

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	240358	169903	Not available	Not available	Not available	562581

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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