23275 PLN02688
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23275 chr_6 PLN02688 1723381 1724321 + PLN02688

Synonyms

NCBI ID Ensembl Genomes exon ID
7444587 Thaps23275.2, Thaps23275.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0123

Most Highly Correlated Transcripts

10898

hypothetical protein
0.8988

35136

NA
0.898

5784

hypothetical protein
0.8949

24167

hypothetical protein
0.8942

31757

PLPDE_III_YBL036c_euk
0.8941

2540

hypothetical protein
0.8939

1014

hypothetical protein
0.8938

5105

hypothetical protein
0.8926

23550

hypothetical protein
0.8908

7936

ATP-synt_10 superfamily
0.8899

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
P5CR_dimer superfamily Pyrroline-5-carboxylate reductase dimerization; Pyrroline-5-carboxylate reductase consists of two... - 175.639 4.41E-55 162 - 268 superfamily 258885
P5CR_dimer superfamily Pyrroline-5-carboxylate reductase dimerization; Pyrroline-5-carboxylate reductase consists of two... - 175.639 4.41E-55 162 - 268 superfamily 258885
F420_oxidored NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent. cl19126 61.0799 2.36E-12 4 - 102 specific 252177
F420_oxidored superfamily NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent. - 61.0799 2.36E-12 4 - 102 superfamily 267479
PLN02688 pyrroline-5-carboxylate reductase - 400.487 6.91E-141 3 - 271 multi-dom 178291

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25379 PHATRDRAFT_25379 Not available 193302 363767 Cre03.g154550.t1.1 AT5G14800.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004735 GO:0006561 -

GO:0004735

pyrroline-5-carboxylate reductase activity

Details: 
Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+.
GO Category: 
MF

GO:0006561

proline biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
GO Category: 
BP

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