23330 Reprolysin_3Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23330	chr_7	Reprolysin_3	12613	16802	-	Reprolysin_3

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446578	Thaps23330.7, Thaps23330.3, Thaps23330.10, Thaps23330.9, Thaps23330.6, Thaps23330.5, Thaps23330.8, Thaps23330.4, Thaps23330.1, Thaps23330.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0250

Most Highly Correlated Transcripts

bd392 (bd392) DEXDc 0.8783	bd446 (bd446) HrpA 0.8389	3287 hypothetical protein 0.8327	6376 hypothetical protein 0.8262	268257 fabG 0.8196	22634 hypothetical protein 0.8134
bd874 (bd874) NA 0.8053	23528 Rab11_like 0.7917	14384 cyclophilin superfamily 0.7901	268443 SAICAR_synt_Sc 0.7873

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Reprolysin_3		Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the...	cl00064	67.7347	3.60E-13	263 - 360	specific	257898
ZnMc superfamily		Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,...	-	67.7347	3.60E-13	263 - 360	superfamily	260167

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_39015	PHATRDRAFT_39015	260150	199591	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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