23354 RNA-binding protein of the pumilio family
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23354 chr_7 RNA-binding protein of the pumilio family 250330 252811 - RNA-binding protein of the pumilio family

Synonyms

NCBI ID Ensembl Genomes exon ID
7446619 Thaps23354.2, Thaps23354.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

22985

WD40 superfamily
0.9506

24849

(Tp_CCCH8) DnaQ_like_exo superfamily
0.9422

268559

COG1084
0.9401

34006

Sun
0.9353

23336

SRP40_C superfamily
0.9347

268735

(GPB1) WD40
0.9338

24016

Ebp2 superfamily
0.9332

39022

COG2319
0.9321

23900

hypothetical protein
0.9319

40223

PLN02347
0.9318

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47058 PHATRDRAFT_47058 209112 196086 Not available Cre12.g528950.t1.1 AT3G16810.1 554415

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0016071 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0016071

mRNA metabolic process

Details: 
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO Category: 
BP

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