23394 GAT_1 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23394 chr_7 GAT_1 superfamily 514979 518749 - GAT_1 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448976 Thaps23394.2, Thaps23394.1, Thaps23394.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0483

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0216
 0.36

Most Highly Correlated Transcripts

21732

Atx10homo_assoc superfamily
0.8907

bd1813

(bd1813) NA
0.882

bd1802

(bd1802) NA
0.8784

bd739

(bd739) NA
0.8719

21673

hypothetical protein
0.8648

bd738

(bd738) NA
0.8436

264271

PKc_like superfamily
0.8434

bd1801

(bd1801) NA
0.8415

7830

7tm_3 superfamily
0.8388

25531

hypothetical protein
0.8364

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 113.142 1.16E-27 313 - 514 superfamily 260141
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 113.142 1.16E-27 313 - 514 superfamily 260141
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 113.142 1.16E-27 313 - 514 superfamily 260141

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_37460 PHATRDRAFT_37460 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008236 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

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