23519 SIN3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23519 chr_7 SIN3 1254324 1259415 - SIN3

Synonyms

NCBI ID Ensembl Genomes exon ID
7447103 Thaps23519.2, Thaps23519.1, Thaps23519.4, Thaps23519.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0009

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0125
 0.41

Most Highly Correlated Transcripts

bd1857

(bd1857) DnaJ
0.9156

40200

TRX_reduct
0.8691

6028

NA
0.8604

261400

NA
0.8565

16295

FBPase
0.8555

24883

Pat_PLPL
0.8551

264556

FBPase
0.854

7332

hypothetical protein
0.8537

bd208

(bd208) DUF3529
0.8512

261690

ABCG_EPDR
0.8423

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sin3_corepress Sin3 family co-repressor; This domain is found on transcriptional regulators. It forms interactions... cl07053 152.82 1.11E-42 679 - 779 specific 254714
Sin3_corepress superfamily Sin3 family co-repressor; This domain is found on transcriptional regulators. It forms interactions... - 152.82 1.11E-42 679 - 779 superfamily 263157
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.961 5.41E-13 241 - 287 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.961 5.41E-13 241 - 287 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.961 5.41E-13 241 - 287 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.961 5.41E-13 241 - 287 superfamily 251462
SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] - 394.284 4.03E-116 131 - 902 multi-dom 227889

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24019 PHATRDRAFT_24019 211372 254267 461196 Cre03.g180800.t1.1 AT5G15020.2 297076

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 GO:0006355 GO:0004402 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0004402

histone acetyltransferase activity

Details: 
Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
GO Category: 
MF

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