23545 DnaJ
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23545 chr_7 DnaJ 1405953 1410439 - DnaJ

Synonyms

NCBI ID Ensembl Genomes exon ID
7450685 Thaps23545.2, Thaps23545.3, Thaps23545.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0331

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0056
 0.44

Most Highly Correlated Transcripts

270005

hypothetical protein
0.7994

25267

hypothetical protein
0.7934

bd1749

(bd1749) NA
0.7929

25079

hypothetical protein
0.7875

bd1667

(bd1667) Mpp10
0.785

23692

hypothetical protein
0.7728

bd1876

(bd1876) NatB_MDM20 superfamily
0.7629

22659

hypothetical protein
0.7622

bd1709

(bd1709) NA
0.7608

5171

hypothetical protein
0.7595

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play... cl02542 75.6597 2.40E-16 1258 - 1311 specific 99751
DnaJ superfamily DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play... - 75.6597 2.40E-16 1258 - 1311 superfamily 261333
DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification,... - 90.3771 2.25E-19 1260 - 1319 multi-dom 223560

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9321 PHATRDRAFT_9321 264420 296963 Not available Not available Not available 524984

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006457 GO:0031072 GO:0051082 GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

GO:0006457

protein folding

Details: 
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO Category: 
BP

GO:0031072

heat shock protein binding

Details: 
Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
GO Category: 
MF

GO:0051082

unfolded protein binding

Details: 
Interacting selectively and non-covalently with an unfolded protein.
GO Category: 
MF

GO:0003735

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0005840

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

Add comment

Log in to post comments