23700 lysozyme_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23700 chr_8 lysozyme_like superfamily 274000 278109 - lysozyme_like superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0459

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0115
 0.37

Most Highly Correlated Transcripts

22002

hypothetical protein
0.8702

268366

Glyco_18
0.8628

6273

LRR_RI superfamily
0.8548

25591

hypothetical protein
0.8464

9406

hypothetical protein
0.8463

bd1770

(bd1770) NA
0.8461

269264

hypothetical protein
0.8458

21663

hypothetical protein
0.8368

23988

DUF1800 superfamily
0.8355

22215

hypothetical protein
0.8352

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
lysozyme_like superfamily lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT... - 112.774 1.79E-27 323 - 569 superfamily 260275

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 220947 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004568 GO:0006032 GO:0009613 GO:0016998 GO:0016020 GO:0030154 -

GO:0004568

chitinase activity

Details: 
Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO Category: 
MF

GO:0006032

chitin catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO Category: 
BP

GO:0009613

NA

Details: 
NA
GO Category: 
NA

GO:0016998

cell wall macromolecule catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0030154

cell differentiation

Details: 
The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
GO Category: 
BP

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