24004 Tfb4 superfamily
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
24004 chr_9 Tfb4 superfamily 659632 660952 + Tfb4 superfamily
NCBI ID Ensembl Genomes exon ID
7453048 Thaps24004.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0314
(bd1948) NA
0.8678
hypothetical protein
0.8597
(bd933) NA
0.8552
hypothetical protein
0.8552
hypothetical protein
0.8516
PKc_like superfamily
0.8499
hypothetical protein
0.8488
PLN02350
0.8482
hypothetical protein
0.8478
KU superfamily
0.8465
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Tfb4 superfamily Transcription factor Tfb4; This family appears to be distantly related to the VWA domain. - 162.828 1.10E-46 12 - 389 superfamily 261208
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_44108 PHATR_44108 193684 192807 Not available Cre03.g172050.t1.1 AT1G18340.1 508027
KEGG description KEGG Pathway
Nucleotide excision repair map03420
GO:0003700 GO:0005634 GO:0006281 GO:0006355 -

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP
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