24180 PhyHThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24180	chr_10	PhyH	553761	554959	-	PhyH

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445894	Thaps24180.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0284	0.26	0.16 0.049

Most Highly Correlated Transcripts

bd1807 (bd1807) RRS1 superfamily 0.9438	23210 hypothetical protein 0.9431	23242 PRK00142 0.9411	5104 hypothetical protein 0.9347	23209 hypothetical protein 0.9277	36406 Ribosomal_L7_archeal_euk 0.9241
22099 hypothetical protein 0.9216	2392 hypothetical protein 0.9191	21973 G-patch 0.919	30454 Brix 0.9125

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PhyH		Phytanoyl-CoA dioxygenase (PhyH); This family is made up of several eukaryotic phytanoyl-CoA...	cl17312	121.793	1.68E-32	57 - 340	specific	253349
PhyH superfamily		Phytanoyl-CoA dioxygenase (PhyH); This family is made up of several eukaryotic phytanoyl-CoA...	-	121.793	1.68E-32	57 - 340	superfamily	266621

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_29381	PHATRDRAFT_29381	160634	153670	61074	Cre16.g673281.t1.1	AT2G01490.1	561797

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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