24345 Cupin_8 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24345 chr_11a Cupin_8 superfamily 475998 479367 - Cupin_8 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448327 Thaps24345.2, Thaps24345.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0242

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0251
 0.43

Most Highly Correlated Transcripts

21281

hypothetical protein
0.8853

bd690

(bd690) NA
0.8646

bd1934

(bd1934) NA
0.8564

1692

hypothetical protein
0.8543

bd1801

(bd1801) NA
0.8534

bd738

(bd738) NA
0.8528

264498

PRK00142
0.8364

20752

hypothetical protein
0.8356

23144

hypothetical protein
0.8351

32395

RNA_pol
0.8327

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Cupin_8 superfamily Cupin-like domain; This cupin like domain shares similarity to the JmjC domain. - 104.354 1.62E-24 609 - 999 superfamily 267658
FBA superfamily F-box associated region; Members of this family are associated with F-box domains, hence the name... - 66.7708 1.87E-12 306 - 466 superfamily 252514

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48391 PHATRDRAFT_48391 248151 63878 Not available Cre16.g694201.t1.1 Not available 539491

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 GO:0005515 GO:0030163 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0030163

protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
GO Category: 
BP

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