24475 (RPT3) PTZ00454
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24475 chr_12 (RPT3) PTZ00454 452428 453811 + PTZ00454

Synonyms

NCBI ID Ensembl Genomes exon ID
7445815 Thaps24475.1, Thaps24475.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0129

Most Highly Correlated Transcripts

21119

hypothetical protein
0.9119

269276

hypothetical RNA binding protein
0.9097

1244

hypothetical protein
0.9097

23517

PRK13759
0.9059

13448

Sec1
0.9051

25583

UAS
0.9049

2494

UAA
0.9024

6316

hypothetical protein
0.8998

6710

hypothetical protein
0.8983

23259

Bromodomain
0.8972

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 110.699 3.20E-29 123 - 290 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 110.699 3.20E-29 123 - 290 superfamily 267297
PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional - 711.534 0 1 - 373 multi-dom 240423

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11735 PHATRDRAFT_11735 258894 285250 Not available Cre09.g402450.t1.2 AT5G58290.1 554008

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0005524 GO:0000166 GO:0017111 GO:0005634 GO:0005737 GO:0016787 GO:0030163 GO:0008575 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0030163

protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
GO Category: 
BP

GO:0008575

NA

Details: 
NA
GO Category: 
NA

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