25583 UASThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25583	chr_20	UAS	130540	132850	-	UAS

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447819	Thaps25583.2, Thaps25583.4, Thaps25583.3, Thaps25583.5, Thaps25583.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0129

Most Highly Correlated Transcripts

12836 EEP superfamily 0.9116	24475 (RPT3) PTZ00454 0.9049	22284 Nudix_Hydrolase superfamily 0.8934	21119 hypothetical protein 0.8811	21025 hypothetical protein 0.8728	25619 hypothetical protein 0.872
3493 hypothetical protein 0.871	22192 FHA 0.8708	25655 hypothetical protein 0.8706	4482 hypothetical protein 0.8698

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UAS		UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized...	cl00388	130.804	5.00E-36	288 - 394	specific	239256
Thioredoxin_like superfamily		Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX...	-	130.804	5.00E-36	288 - 394	superfamily	260398
UBQ superfamily		Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins....	-	59.2155	6.25E-11	525 - 598	superfamily	260222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43033	PHATRDRAFT_43033	225735	251809	218037	Cre03.g191150.t1.2	AT1G14570.4	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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