24642 PLN02286
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24642 chr_13 PLN02286 400488 403093 + PLN02286

Synonyms

NCBI ID Ensembl Genomes exon ID
7445749 Thaps24642.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0016
 0.55

Most Highly Correlated Transcripts

27435

PAH
0.9463

264318

(Tp_CCHH25) regulator [Rayko]
0.9438

31437

Peptidase_M16 superfamily
0.9319

2954

hypothetical protein
0.9248

262152

hypothetical protein
0.9242

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.922

263786

(ZFP20) zf-TAZ
0.9219

269439

hypothetical protein
0.92

17815

E1_enzyme_family superfamily
0.918

20349

GH38-57_N_LamB_YdjC_SF superfamily
0.9139

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ArgRS_core catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core... cl00015 233.225 1.33E-70 400 - 661 specific 185675
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 233.225 1.33E-70 400 - 661 superfamily 260139
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 133.879 8.09E-36 705 - 855 superfamily 264512
Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl... cl04104 63.4404 3.89E-12 272 - 357 specific 251994
Arg_tRNA_synt_N superfamily Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl... - 63.4404 3.89E-12 272 - 357 superfamily 262026
PLN02286 arginine-tRNA ligase - 843.151 0 269 - 861 multi-dom 215160

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 418599 Cre03.g143887.t1.1 AT4G26300.1 556492

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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