25024 SEP superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25024	chr_15	SEP superfamily	575985	576821	+	SEP superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442104	Thaps25024.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0103

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0041	0.50

Most Highly Correlated Transcripts

3756 hypothetical protein 0.8697	32468 STKc_CDC2L1 0.8686	33915 Mito_carr 0.8671	263228 AAA_28 0.858	261172 (ADH2) MDR superfamily 0.8496	36995 LplA 0.847
13448 Sec1 0.8448	22407 hypothetical protein 0.8384	3524 hypothetical protein 0.833	11680 hypothetical protein 0.83

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SEP superfamily		SEP domain; The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster...	-	87.0761	1.07E-21	76 - 176	superfamily	261398

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_34061	PHATRDRAFT_34061	207410	315225	429219	Cre01.g034451.t1.1	AT4G04210.1	318553

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

Not available -

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