25094 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25094 chr_16a PseudoU_synth_RluCD_like 18450 19905 - PseudoU_synth_RluCD_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7445457 Thaps25094.2, Thaps25094.3, Thaps25094.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0122

Most Highly Correlated Transcripts

10592

hypothetical protein
0.9112

16114

PLN02350
0.9087

264610

Prolidase
0.8892

13448

Sec1
0.8851

264410

MFS
0.8846

263866

AAK superfamily
0.8787

37497

cysE
0.8744

35390

(KAR3) NADB_Rossmann superfamily
0.874

bd410

(bd410) HNHc
0.8731

19158

GRX_PICOT_like
0.873

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 104.727 1.73E-26 94 - 354 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 104.727 1.73E-26 94 - 354 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12940 PHATRDRAFT_12940 Not available 63548 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

Add comment

Log in to post comments