25634 PseudoU_synth superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25634 chr_20 PseudoU_synth superfamily 400528 402917 + PseudoU_synth superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443368 Thaps25634.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0500

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

bd1946

(bd1946) NA
0.9125

4108

hypothetical protein
0.9011

bd788

(bd788) NA
0.899

bd1801

(bd1801) NA
0.8775

bd738

(bd738) NA
0.8735

bd692

(bd692) NA
0.8686

bd930

(bd930) HA
0.8681

bd1877

(bd1877) NA
0.864

24274

hypothetical protein
0.8603

bd1934

(bd1934) NA
0.8602

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 161.102 4.06E-46 101 - 449 superfamily 260207
truA tRNA pseudouridine synthase A; Validated - 159.922 1.14E-45 98 - 449 multi-dom 234577

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0008033 GO:0009982 GO:0016439 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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