25722 Beach superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25722	chr_22	Beach superfamily	426374	432957	+	Beach superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442830	Thaps25722.1, Thaps25722.3, Thaps25722.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0292

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0196	0.36	0.00000075 0.45

Most Highly Correlated Transcripts

14317 PRK07379 0.8542	25795 REX4_like 0.8452	25824 hypothetical protein 0.8427	22685 COG2520 0.8362	34596 WD40 0.8319	24332 hypothetical protein 0.8314
22728 hypothetical protein 0.828	22302 Peptidase_C19 superfamily 0.8277	23513 COG1258 0.8239	bd935 (bd935) TFIIS_I 0.823

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Beach superfamily		BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a...	-	183.983	6.06E-51	788 - 1045	superfamily	263990

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre17.g732650.t1.2	AT5G18525.1	521876

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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