26051 (GLNA) PLN02284
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26051 chr_22 (GLNA) PLN02284 945287 947028 + PLN02284

Synonyms

NCBI ID Ensembl Genomes exon ID
7449439 Thaps26051.1, Thaps26051.2, Thaps26051.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0042

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0083
 0.43

Most Highly Correlated Transcripts

270361

hypothetical protein
0.7673

ThpsCp091

(thiS) thiamine biosynthesis protein
0.7633

11993

CGS_like
0.7556

2892

tsf
0.7457

20996

(Tp_bZIP18) regulator [Rayko]
0.7443

ThpsCp134

(rpl34) ribosomal protein L34
0.7384

8533

hypothetical protein
0.7372

31380

hypothetical protein
0.7271

10092

hypothetical protein
0.7228

268070

Trp-synth-beta_II superfamily
0.7213

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Gln-synt_C superfamily Glutamine synthetase, catalytic domain; Glutamine synthetase, catalytic domain. - 261.381 1.79E-84 151 - 398 superfamily 249604
Gln-synt_C superfamily Glutamine synthetase, catalytic domain; Glutamine synthetase, catalytic domain. - 261.381 1.79E-84 151 - 398 superfamily 249604
Gln-synt_N superfamily Glutamine synthetase, beta-Grasp domain; Glutamine synthetase, beta-Grasp domain. - 79.0945 2.84E-18 61 - 145 superfamily 252271
Gln-synt_N superfamily Glutamine synthetase, beta-Grasp domain; Glutamine synthetase, beta-Grasp domain. - 79.0945 2.84E-18 61 - 145 superfamily 252271
PLN02284 glutamine synthetase - 675.64 0 55 - 402 multi-dom 177922

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51092 PHATRDRAFT_51092 158325 245279 437187 Cre02.g113200.t1.1 AT5G35630.3 289026

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004356 GO:0006807 GO:0006542 -

GO:0004356

glutamate-ammonia ligase activity

Details: 
Catalysis of the reaction: L-glutamate + ATP + NH(4)(+) = L-glutamine + ADP + 2 H(+) + phosphate.
GO Category: 
MF

GO:0006807

nitrogen compound metabolic process

Details: 
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
GO Category: 
BP

GO:0006542

glutamine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid.
GO Category: 
BP

Add comment

Log in to post comments