260805 SRP54_euk
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
260805 chr_1 SRP54_euk 548884 550399 - SRP54_euk
NCBI ID Ensembl Genomes exon ID
7453406 Thaps260805.1, Thaps260805.2, Thaps260805.3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0437
Normalized Mean Residue
Thaps_bicluster_0087
0.32
(bd1866) NA
0.8509
hypothetical protein
0.7907
(bd663) NA
0.7875
(Tp_Myb2R9) PLN03142
0.7835
PKc_like superfamily
0.7736
C2 superfamily
0.7729
MgtA
0.7711
Pkinase
0.7587
hypothetical protein
0.7561
0.7541
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SRP54 SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54... cl18944 301.395 1.37E-100 114 - 309 specific 249866
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 301.395 1.37E-100 114 - 309 superfamily 267297
SRP_SPB superfamily Signal peptide binding domain; Signal peptide binding domain. - 115.68 2.90E-31 340 - 447 superfamily 251653
SRP_SPB superfamily Signal peptide binding domain; Signal peptide binding domain. - 115.68 2.90E-31 340 - 447 superfamily 251653
SRP54_euk signal recognition particle protein SRP54; This model represents examples from the eukaryotic... - 534.03 0 2 - 446 multi-dom 130492
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13417 PHATR_13417 184137 297080 455543 Cre13.g569200.t1.2 AT1G48900.1 360478
KEGG description KEGG Pathway
Protein export map03060
GO:0003723 GO:0005525 GO:0005786 GO:0006614 GO:0000166 GO:0017111 GO:0006605 -

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

signal recognition particle, endoplasmic reticulum targeting

Details: 
A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana.
GO Category: 
CC

SRP-dependent cotranslational protein targeting to membrane

Details: 
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO Category: 
BP

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

protein targeting

Details: 
The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
GO Category: 
BP
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