261027 class_II_aaRS-like_core superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261027 chr_1 class_II_aaRS-like_core superfamily 1878628 1880637 - class_II_aaRS-like_core superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443136 Thaps261027.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0294

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0041
 0.50

Most Highly Correlated Transcripts

31437

Peptidase_M16 superfamily
0.8973

5722

hypothetical protein
0.8965

261495

Peptidase_M36
0.8945

264318

(Tp_CCHH25) regulator [Rayko]
0.894

23954

hypothetical protein
0.894

27435

PAH
0.8939

9771

hypothetical protein
0.8931

4959

hypothetical protein
0.8905

8693

hypothetical protein
0.8902

12187

hypothetical protein
0.8883

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces... cl19106 124.213 1.98E-33 244 - 349 specific 239815
Asp_Lys_Asn_RS_N superfamily Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (... - 124.213 1.98E-33 244 - 349 superfamily 267459
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 341.083 1.98E-111 376 - 612 superfamily 260313

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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